Expanding WebLS to Support a Breast Cancer Decision Guide

[This article was originally published in PC AI magazine, Volume 12, Number 2 Mar/Apr 98. The
magazine can be reached at PC AI, 3310 West Bell Rd., Suite 119, Phoenix AZ, USA 85023 Tel:
(602) 971-1869, FAX: (602) 971-2321, E-Mail: [email protected], Web: http://www.pcai.com]

by
Mary Kroening, Amzi! inc.
Dr. Sabina Robinson, SAIC
Dr. Fred Hegge, U.S. Army Medical Research and Materiel Command

Background

In 1996, the WebLS tool was built in order to provide a simple inference engine for web-based advisors and problem solvers [Sehmi, 96][Kroening, 96]. The initial focus of this project was to provide a tool that webmasters (as opposed to AI programmers) could use to build small to medium sized expert systems. The expert systems ask the user to enter the values for facts using web forms, then apply if-then rules to select 'chunks' of HTML to include in an output document organized by an outline.

The challenges WebLS faced in its initial implementation were:

  1. Maintaining the state of the inference engine for each user across multiple invocations of the shell via web forms on a multi-user server.
  2. Grouping questions together, instead of the traditional one-at-a-time, to conserve both network bandwidth and user's patience.
  3. Integrate expert system inputs and outputs with existing web resources (e.g. pictures, documents, other sites).
  4. Use an intuitive and easy-to-maintain syntax for the rules, along with debugging tools that ease the development and maintenance processes.
These challenges were met by having WebLS run as a CGI script while maintaining state in temporary files (this has since been replaced by hidden form fields). The displayable content of the expert system's logic-base is all maintained in HTML format, thereby allowing the use of any HTML tags for formatting the display and including content. A means was provided to specify which questions are related and hence should be asked together. And, a simple if-then syntax and backward chaining engine was implemented using Prolog and its operators [Merritt, 96].

This past year, we have expanded WebLS to support a large web-based breast cancer decision guide, called BCPath, with the additional requirement that the knowledge base is both maintainable and verifiable by experts in the field. This work has led to new insights in solving some of the original challenges as well as introducing many new ones. This paper documents the solutions and their implications.

Design Goals and Requirements

The goals and requirements of the BCPath system are:
  1. To provide information to military and non-military breast cancer patients and their families based on the patient's diagnosis and life situation. It is important to note that the decision guide is an information tool to assist in decision making, it does not dispense medical advice or display recommended courses of action. Decision making support is especially important after the initial diagnosis is made as the patient is required to make a number of far-reaching and difficult decisions while under a lot of stress, which adversely affects decision making ability.
  2. Provide information for all the steps along the breast cancer pathway, from prevention, screening and diagnosis to health maintenance and end-of-life issues.
  3. Encode the knowledge in a form that allows for it to be readily edited, verified (vetted), maintained and re-used.
The BCPath system consists of a logic-base and the WebLS shell that executes it.

Logic-Base Architecture

    The BCPath application stressed the original WebLS architecture in two directions. One was size and the other was the need to maintain accurate, verified information in the knowledge base.

    The size issue was addressed by the addition of module support. Modules let a large application, like BCPath, be subdivided into smaller, more manageable chunks.

    The need for accurate, verified information was addressed by using a variation on Arden Logic Modules for the primary knowledge representation. Arden is a tool for knowledge representation that was designed for critical medical applications, and that is often used in event-driven real-time medical systems. For BCPath, the Arden knowledge representation was enhanced to support the more passive inference rules required for a medical decision support system and the web.

Modules for Each Step on the Path

The logic-base for breast cancer decision making is very large, reasonably complex and constantly changing. Breast cancer research provides new information on a regular basis, and oftentimes leads to changes in medical practice standards. To build a manageable system, the BCPath logic-base is structured into a series of modules. Each module represents one step on the path. They are: The user is not required to proceed through the modules in order, nor is each module completely independent. The system keeps all the user-entered facts (age, biopsy type(s), cancer type(s), clinical stage, etc.) as global data, and the knowledge engineer can create global rules, such as those that deduce the clinical stage of the cancer from the attributes of the tumor(s).

As of this writing the Diagnosis & Prognosis and Treatment modules are nearing completion. They were written first because Treatment is the largest and most complex module, and it heavily depends on Diagnosis & Prognosis.

Using Arden ALMs to Build Modules

       
    Figure 1: The breast cancer knowledgebase is comprised of a large number of small pieces of knowledge called ALMs. These ALMs are grouped by subject area into modules, which are then executed by the WebLS shell. The ALMs are supported by conventional web documents and pictures.
Each BCPath module is composed of a number of smaller units called Arden Logic Modules (ALMs). An ALM is a frame-based representation of a single piece of knowledge where the more critical slots contain either an inference rule, questions to be posed to the user or chunks of answer text to be displayed if appropriate. Unlike knowledge representation structures designed just with the inference engine in mind, ALMs also contain a large number of slots for human use. These slots describe the person and organization who wrote the ALM, the date and version of this particular instance, and the medical references used both for writing the ALM and supporting its knowledge. It is these slots which are used in the human process of writing, editing and vetting each ALM to ensure it is readable, consistent and correct according to medical standards.

Figure 1 shows the overall relationship between the key components of the BCPath system. ALMs are stored and maintained in a conventional file/directory structure, where each subdirectory contains the ALMs for a single BCPath module. A preprocessor then reads all of the ALMs in a module and creates a WebLS module file from it. The WebLS modules are then made available to WebLS, running on a Web server, and are available for interaction with a user.

Sample ALM

Below is a sample ALM. There are three frames: maintenance, library and knowledge. The last frame contains the heart of the ALM as far as the WebLS inference engine is concerned. Parts of the first two frames are used as well, but only to provide background information to the user when asked. This particular ALM contains a rule that concludes whether or not radiation therapy is recommended and the HTML text that will be displayed to the user if this particular rule is activated.
  
maintenance:
  title:   International Consensus Panel: Adjuvant Therapy Recommendations;;
  filename:   ra_rec_st_gallen_consensus_chemotherapy_1;;
  version:   1.00;;
  institution:   SAIC;;
  author:   Kim Francis;;
  specialist:   Sabina Robinson;;
  date:   1997-07-12;;
  validation:   testing;;

library:
  purpose:  To indicate under which conditions chemotherapy is generally recommended. ;;
  explanation:  According to an international panel of breast cancer experts, chemotherapy is recommended for premenopausal women who have
    node positive breast cancer and are not experiencing a recurrence. ;;
  keywords:  chemotherapy, axillary nodes;;
  citations:
    Goldhirsch A; Wood WC; Senn H-J; et al. Meeting highlights: International 
    consensus panel on the treatment of primary breast cancer. Journal of the 
    National Cancer Institute 1995 87:1441-1445. ;;
  links:  ;;

knowledge:
  type: rule_answer;;
  priority: 23;;
  logic:   {prolog:
    if recurrence = no and menopausal = pre 
    and breast_cancer = node_positive 
    then recommended = rec_st_gallen_consensus_chemotherapy_1};;
  name: rec_st_gallen_consensus_chemotherapy_1;;
  applies:
    This applies to node positive breast cancer in premenopausal women. </P>;;
  text:
    According to the treatment recommendations developed by the 
    <A HREF="/gloss.html#consensuspanel">consensus panel</A> 
    at the 5th International Conference on 
    <A HREF="/gloss.html#adjuvanttherapies">Adjuvant Therapy</A> 
    of Primary Breast Cancer held in St. Gallen, Switzerland, in March 1995, 
    chemotherapy is considered appropriate treatment for premenopausal patients with node-
    positive breast cancer. </P>;;
end:
 

Types of ALMs

  There are three types of ALMs in BCPath. Question ALMs describe how to ask the user for a value for a fact. Rule ALMs deduce facts from other facts. Together these two represent the ways to get facts into the system. The third type of ALM, Rule-Answer, (like the sample above) has one or more rules and some HTML text to output. When the conditions in the rule are matched, the corresponding HTML 'chunk' is included in the custom-generated document. Most of the ALMs in the system are Rule-Answers.

Figure 3 presents another view of the relationship between ALMs and the WebLS inference engine.

Organizing ALMs by Topic

The result of a consultation with WebLS is a custom-generated document organized according to an outline. The document typically contains 10-100 'chunks' of HTML from the Rule-Answer ALMs. Because this can be a large amount of information, the answers are organized into sections, where each section corresponds to a goal from the then-side of the rules (e.g. then goal = value). The goals/sections for BCPath are as follows: Within an outline section, the answers are ordered according to a priority number specified in each ALM. Fine control is provided over the document's appearance by providing headers, footers and answer separators for each section.

Building the Logic-Base

Written by the Domain Expert

The rule syntax and inferencing semantics in WebLS were kept as simple as possible so that systems could be written by the domain expert. This was the case with BCPath-the logic-base was written entirely by a pharmacologist, who had no prior experience with programming or expert systems, and only user-level knowledge of PCs, although a programmer was available for design consultations.

The development process was aided considerably by two features. First, automatic consistency checking of the logic-base was added to the system. Second, a full debugging trace was available at all times.

Automatic Consistency Checking

When WebLS loads a logic-base (in debug mode) a number of consistency checks are performed. These ensure:
  1. Each condition refers to a question fact or the result of another rule
  2. Each fact value in a condition is legimate
  3. Answers referenced on the then-side are defined
  4. There are no 'orphan' questions or answers

Using Full Traces for Debugging

Each time WebLS is invoked, a full trace of its activity is produced (in debug mode). This trace shows the values of all user-entered facts, and the complete inferencing activity: the checking of every rule and every value in every rule. This allows the logic-base developer to understand exactly why and when questions and answers are presented.

Running the Logic-Base with WebLS

WebLS is a CGI script, written in C and Amzi!Ò Prolog, which runs on the Web server using Amzi!'s Logic ServerÔ interface. Provisions are being made to also run WebLS using the faster NSAPI and ISAPI interfaces. The operation of the script is controlled by a main module that defines all the modules in the system, plus settings for all sorts of global parameters.

Compiling ALMs into WebLS Modules

WebLS logic-bases are actually Amzi! Prolog source files that utilize Prolog operators (if, then, etc.) to get a readable rule syntax. ALMs are not Prolog source files. There is a translator that takes a group of ALMs and compiles them together into a single module. WebLS can execute the module either in source form, or as a compiled Prolog module (for better performance).

How the Inference Engine Works

The inference engine in WebLS tries to prove every rule. It starts by outputting a fixed set of questions that the user responds to. In essence, this 'primes' the inference engine with a beginning set of facts. Using those facts, the WebLS engine proceeds through the goal list trying to prove every rule for each goal. If it encounters a rule that could be true (a hypothesis) if additional facts were known, then those facts are added onto a list of questions to ask next.

This process continues until all the rules have been proven or disproven. Then an output document is assembled from the 'chunks' of HTML in the answers (to the goals). This process is shown in Figure 4.

Initially, we get some facts when the user answers the first set of questions. These facts are processed by the rules, which result in some of the rules being proven (conclusions), and many rules as hypotheses for which additional information is required.

As the inference engine continues to run, the number of facts and rules that have been proven (conclusions) increase, while the number of rules left to prove (hypotheses) declines.

After each set of questions is answered this process continues, the number of facts and conclusions increase and the hypotheses decrease.

Finally, all the rules have been proven or disproven and we are left with a set of facts and a set of conclusions or answers which are used to assemble the output document.

Figure 4

Grouping Questions

One of the biggest challenges in WebLS is how to ask the questions. More traditional expert systems simply ask the question when the value is needed. But this is tedious and inefficient over the web. So we made a number of efforts for grouping questions together.

First Attempt: By Rules

Our first attempt was to allow rules on questions that would control when they are asked. For example, 'biopsy type' would be asked only if 'biopsy performed' was 'yes', as there is no need to ask the biopsy type if none was performed yet.

Unfortunately this deviated from our keep-it-simple philosophy, and our domain expert started coding knowledge in the rules for questions, instead of writing more complete rules. This led to an incomprehensible inferencing mechanism and logic-bases that were impossible to debug.

Second Attempt: By Ask After and Ordering

Our second attempt, which seems to work very well, is to simply have an optional 'ask after' list for a question. In this case, given the list of questions to ask, WebLS eliminates the questions that need to be asked after other questions. For example, 'biopsy type' would have an 'ask after' of 'biopsy performed'. When WebLS has both questions on its list to ask, 'biopsy type' will be delayed until 'biopsy performed' has been answered.

To give precise control over the ordering of questions, we also use an optional priority number in the questions. This results in ordering the questions on the output page.

Saving the Inferencing State Across Web Forms and Sessions

Web applications run in a unique manner. They are started up each time the user submits a form or presses a button. Hence, WebLS is being invoked by multiple users simultaneously.

Some mechanism is needed to save the facts as each set of questions is being asked. This is simply done by using hidden form fields. So when a web form is submitted by the user, that form contains all the new responses plus all the previous responses. Of course, this also means the WebLS inference engine starts 'from the top' each time it is invoked. This has not proven to be a performance problem, however, should it become so, intermediate facts could also be saved in hidden form fields.

As the decision guide consists of many modules which may be consulted over a period of months or years, it is further desirable to save the facts across BCPath sessions. This is accomplished by writing them to a cookie, which is saved in the user's web browser. This approach was chosen to protect the user's privacy under U.S. government regulations.

Nice Touches

Displaying/Clearing Current Facts

WebLS includes the ability to display the currently saved cookie facts, and to allow the user to selectively delete particular responses. The practical result of this is the next time a consultation is run, those questions will be asked again.

Displaying Citations and Advanced Information

As the output document consists of many chunks of information, an 'advanced' section was added to the ALMs. This section is also an HTML chunk, but contains more detailed or more difficult information. The user can click on a special icon to see the additional information that pertains to a particular 'chunk'.

In addition, the user can review the citations corresponding to a 'chunk' of information. Of course, these are displayed directly from the human-readable part of the ALMs.

Conclusions and Future Work

As of this writing, the system has been reviewed by breast cancer caregivers, support organizations, survivors, senior military officers, doctors and specialists, and is nearing the end of its phase 1 funding. We are currently systematically vetting and editing the knowledgebase information in order to beta test the diagnosis module with new breast cancer patients within the Department of Defense. There is also a significant amount of knowledge completed for the treatment section, as well as some work in coping and DoD specific issues.

The review and testing to date has indicated the need for the following features.

Multiple Views of the Selected 'Chunks'

WebLS currently implements one 'view' of the information selected by the rules during inferencing, that is, the document in outline form. As the number of 'chunks' selected increases, additional views are needed. One such view would allow the display of 'chunks' that pertain to one or more keywords. Other views might group 'chunks' that emanate from the same source.

Making Everything Objects

The next logical step with ALMs is to turn them into proper objects that are stored in a database. Also, all pictures, videos, sounds and external URLs need to be made into objects so they can be readily maintained. This architecture is shown below:
 

Project Group Development Tools

To support the view of ALMs as objects, web-based tools need to be created for the ALM developer. These tools allow ALMs to be checked-in and out of the database. They can also find ALMs, perform syntax and semantic checks and provide various views of the database.

These tools are needed as the next phase of BCPath development will require multiple domain experts, as well as editors (for consistent language use) and vetters (to ensure medically correct content).

Bibliography

[Kroening, 96] Kroening, M. 1996 "Automating Tech Support", Dr. Dobb's Sourcebook, Sep/Oct 96

[Merritt, 96] Merritt, D. 1996, "Building Custom Rule Engines", PC AI, Mar/Apr 96.

[Sehmi, 96] Sehmi, A., Kroening M., 1996, "WebLS: A Custom Prolog Rule Engine for Providing Web-Based Tech Support", 1st Workshop on Logic Programming Tools for INTERNET Applications, JICSLP '96